SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    66018, 66017, 66016, 66015, 66014, 66013, 
    66012, 66011, 66010, 66009, 66008, 
    66007, 66006, 66005, 66004, 66003, 
    66002, 66001, 66000, 65999, 65998, 
    65997, 65996, 65995, 65994
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00063

Explain
id select_type table type possible_keys key key_len ref rows Extra
1 SIMPLE cscart_product_prices range usergroup,product_id,lower_limit,usergroup_id usergroup 9 50 Using where

Result

product_id price
65994 1.69000000
65995 1.69000000
65996 1.69000000
65997 1.69000000
65998 1.69000000
65999 1.69000000
66000 1.69000000
66001 1.69000000
66002 1.69000000
66003 1.69000000
66004 1.69000000
66005 1.69000000
66006 1.69000000
66007 1.69000000
66008 1.69000000
66009 1.69000000
66010 1.69000000
66011 1.69000000
66012 1.69000000
66013 1.69000000
66014 1.69000000
66015 1.69000000
66016 1.69000000
66017 1.69000000
66018 1.69000000