SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    62565, 62564, 62563, 62562, 62561, 62560, 
    62559, 62558, 62557, 62556, 62555, 
    62554, 62553, 62552, 62551, 62550, 
    62549, 62548, 62547, 62546, 62545, 
    62544, 62543, 62542, 62541
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00066

Explain
id select_type table type possible_keys key key_len ref rows Extra
1 SIMPLE cscart_product_prices range usergroup,product_id,lower_limit,usergroup_id usergroup 9 50 Using where

Result

product_id price
62541 1.69000000
62542 1.69000000
62543 1.69000000
62544 1.69000000
62545 1.69000000
62546 1.69000000
62547 1.69000000
62548 1.69000000
62549 1.69000000
62550 1.69000000
62551 1.69000000
62552 1.69000000
62553 1.69000000
62554 1.69000000
62555 1.69000000
62556 1.69000000
62557 1.69000000
62558 1.69000000
62559 1.69000000
62560 1.69000000
62561 1.69000000
62562 1.69000000
62563 1.69000000
62564 1.69000000
62565 1.69000000