SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    90895, 90615, 90614, 90624, 90536, 90162, 
    89928, 89927, 89922, 89694, 89689, 
    89688, 89687, 89686, 89680, 89590, 
    89589, 90080, 90079, 90077
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00065

Explain
id select_type table type possible_keys key key_len ref rows Extra
1 SIMPLE cscart_product_prices range usergroup,product_id,lower_limit,usergroup_id usergroup 9 40 Using where

Result

product_id price
89589 1.69000000
89590 1.69000000
89680 1.69000000
89686 1.69000000
89687 1.69000000
89688 1.69000000
89689 1.69000000
89694 1.69000000
89922 1.69000000
89927 1.69000000
89928 1.69000000
90077 1.69000000
90079 1.69000000
90080 1.69000000
90162 1.69000000
90536 1.69000000
90614 1.69000000
90615 1.69000000
90624 1.69000000
90895 1.69000000